Scaffold Ga0070748_1027024

Overview

Basic Information

• Taxon OID: 3300006920
• Scaffold ID: Ga0070748_1027024
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2373
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003678	Metagenome / Metatranscriptome	474	Y
F017146	Metagenome / Metatranscriptome	242	Y
F102833	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070748_10270241	F102833	GGCGG	MGFLDKIVSVALPAAIGFATGGPAGAFAGAASGADAEKAQRKQKSLIRQRQQEEQRRINAMEFDIRGTGLRQGVDYYGMPRKQTQAGFGSGFGSFLSDVGSNIVSPITSLFSQVRPFISQQSQGQPALPTRSNLGGQESQESGVTSAFVGGIPNVLGQAARFLRTPAGQVGTGLVGGISASFLGGGNGGMRITRKMKSQYRAVLNLAQGDYDQAASMIGVSTDMFI
Ga0070748_10270242	F003678	GGA	LLYACSTLASLSFIMCLYACVRVGQFINASKGLDWDSVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGNIKNVGG*
Ga0070748_10270245	F017146	N/A	GNGGMRITRKMKSQYRAVLNLAQGDYDQAASMIGVSTDMFIAVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMKRASTTLISNK*