Scaffold Ga0070748_1023174

Overview

Basic Information

• Taxon OID: 3300006920
• Scaffold ID: Ga0070748_1023174
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2585
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F099320	Metagenome	103	N
F100003	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070748_10231744	F027524	N/A	VNEGFIKEKRQVIETACKNICKHSDIWKDLAQEVNIYFLTNELPSNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLQESTELDYLKLKDIPYISNNVYKEYLEQVKQLDEMERIWVEEMVKRNFSISLFSQHTGIHRTTAKERLDFIKEKLRKNNK*
Ga0070748_10231746	F025412	GAG	MNYRELKWGALRSYASKLGVNTKGMPRELLLEWLDAMPDEAHGKHLEPFKGIKQKHPLFKELEPYIPHLKAYKKVKAISPLKEVNEAIATLFVKYIETQKNVRVNLGCGICRQKYYERMIAGYNKLVEEYGGAERI*
Ga0070748_10231747	F099320	GGAGG	MEEQNVYSYCLEVHEDGQLYMVTEYMNGYITIWAANATIENEGEVYFINLYED*
Ga0070748_10231748	F100003	N/A	MKIKKKHYKALQYASVIQRWKYLPSNFIFEVVQNCEINEQMLN