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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006920 Open in IMG/M |
| Scaffold ID | Ga0070748_1015074 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3292 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Candidatus Margulisbacteria → Candidatus Marinamargulisbacteria → unclassified Candidatus Marinamargulisbacteria → Candidatus Marinamargulisbacteria bacterium SCGC AAA071-K20 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003365 | Metagenome / Metatranscriptome | 491 | Y |
| F008385 | Metagenome | 334 | Y |
| F019967 | Metagenome | 226 | N |
| F029238 | Metagenome / Metatranscriptome | 189 | N |
| F076502 | Metagenome | 118 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070748_101507411 | F029238 | AGG | MTTKKTEAAEEKSKGGFKERRKECLTNANKIPTVDIKGKKYSTVNERHRHLLQYFPEARFNEEILFH |
| Ga0070748_10150742 | F076502 | N/A | MDNINKIQEYMFNKKVLIYHGSSGKDYQYYIKEINNDLITIVVDAPIKTSIWSSDHQLWTLDTYNLLSYSKETNKTATWGN* |
| Ga0070748_10150746 | F008385 | N/A | MSQIKTNIYGDIKLCIKCKNPADVIEKGKDYCVECWFENVEGVKFKDVEKQIEEEENES* |
| Ga0070748_10150747 | F019967 | AGGAGG | MKVKLEANEVELALNVASKRFIGNLKMGKGFSYGYQGDYRKQIADSFLGALSEVAYAKAFNKFYNGSYTDNLERYSDSDFQGNIEIRGQEKKDHNFLIIRPGEKKGKYILIVHEGNFEFSIMGWFPFTQDMPERLTNFGYSQRPAVYKVDIKELYNINDL* |
| Ga0070748_10150748 | F003365 | AGG | MKTIGKEWSKKGEEGGCFTADHLSPSQLNKSLDMWFNDYVVLTAAERKALFGNLNMDIGGIVGQAVQDIIVHNLTLEEVMKGKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |