Scaffold Ga0070748_1001083

Overview

Basic Information

• Taxon OID: 3300006920
• Scaffold ID: Ga0070748_1001083
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12850
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (5.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008695	Metagenome / Metatranscriptome	329	Y
F023446	Metagenome / Metatranscriptome	210	Y
F065127	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070748_100108313	F023446	N/A	MSKNVEFIDQLCELMGEGFFLRDQYDQDELFEMQDSIARLIADNANSGLGLAKYMVNKFPTTFLVEKI*
Ga0070748_100108317	F008695	N/A	MKDKFKIIKVEHVWSDSEDRWIYIEYNEQYKIIGLNFMQGSAYDHFKAKWCYNDKGLTEFYRTMIDTFTIEEASSDTIEFINKVMWAYHAAISYKDQY*
Ga0070748_100108323	F065127	N/A	MHSKINAIHQRASNKAFAKVEMCQIIIQQDEHNLKTGNYGADITLEQATLIAEGNKTELKVWQYIAELIEKSNKIQ*