Scaffold Ga0070748

Basic Information
Taxon OID	3300006920 Open in IMG/M
Scaffold ID	Ga0070748_1000371 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	22524
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (6.82%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

22524

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (6.82%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.12

Long. (^o)

-75.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022883	Metagenome / Metatranscriptome	212	Y
F027845	Metagenome / Metatranscriptome	193	Y
F037221	Metagenome / Metatranscriptome	168	Y
F039623	Metagenome / Metatranscriptome	163	N
F039638	Metagenome / Metatranscriptome	163	Y
F101148	Metagenome / Metatranscriptome	102	N
F103244	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070748_100037114	F037221	N/A	MTNWTTEQLKNLKEVTNHKVIYDGYEFVWMSKPDNIWSRHYISNFEDYNKPMSWIHHHTYNWGKEYKQRQEKYLADMRRSLDIDVKIREISREAKIKTKEKVREIVSLKPNITSKEIADILDITPRAVNKHRI*
Ga0070748_100037123	F103244	N/A	MRVEDLTSYENDKSKVTVFMETDTDGSYHFLKHVQDKKTEDGQIIRYSLEMFMAEYYLIEKFIKDNLVNDRKFFKQVMQLKASRNE*
Ga0070748_100037125	F027845	N/A	MTQAEIIELVRDIHPEVDHEGVDIVYDNGNYDVDVRFTSWDCLFTVEIYSKSSEIPLELTSRTMTELFDYTVDLHTEYMRGLTELQETRDYLDIYR*
Ga0070748_100037128	F039623	N/A	MELLDSNSVITFKKFKCLRTNQIYEVVQTECTGRYINNAIDTLVRSDGLRKSFARAELKTRFTNIEGIPEKDYLTKKKKKR*
Ga0070748_100037135	F039638	N/A	MIIKQALELLAGSDWLVADKDIQIAKGLYELPTTFAELRMNNKRKKLLK*
Ga0070748_10003715	F022883	N/A	MNETIQKLRDYASLKNDWYINGQLDILEKQIAIEITKAELNQVTELNKFINK*
Ga0070748_10003717	F101148	N/A	MVKISITTALKIIRSNKDFIFYRVEDNKMVDFTLTNDLSRFRSQYSNKFKIVSDIKKQINNNLKIEL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0070748_1000371

Overview

Ecosystem & Geography

Associated Families

Sequences