Scaffold Ga0070746_10197177

Overview

Basic Information

• Taxon OID: 3300006919
• Scaffold ID: Ga0070746_10197177
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 960
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006697	Metagenome / Metatranscriptome	366	Y
F025017	Metagenome / Metatranscriptome	203	N
F031077	Metagenome / Metatranscriptome	183	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070746_101971771	F025017	N/A	MNQISYRQGIRSKGFQVTVPTTGAQQTLSLSGLAKSF
Ga0070746_101971772	F006697	N/A	MANQVQKLNYVDAKLGVGLPGQQTTRVIYDSVNATASQQFFEFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQIILGSATSSLADHLNLNITVGNQVVVKDFDPSFNSTNRGLAFDRLHSGFNSSQNLELRLLTDIVIPPQVNFKATLQFSNALIAAEDDVTIIFKGYGRIFSAGASF*
Ga0070746_101971773	F031077	N/A	YAGLGTISVKFDLVIGNKTVIKDASCEFGGEQAFYNDGTVASAVIDLEGVGILIPPQVEYYVVAKPFAGDARTTQSIRLGCYLFGTGALLNFNTTI*