Scaffold Ga0070746_10171201

Overview

Basic Information

• Taxon OID: 3300006919
• Scaffold ID: Ga0070746_10171201
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1048
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070746_101712011	F006383	GGAGG	MLVKDKMWQVQQPGTILRARHSARRGQLALVLTKAYHEIRGTGTRGDHYVKMQIVSTGERIEETLTNANNCWDIVSESS*
Ga0070746_101712012	F021674	GAGG	MERETYNSRLKTNPEDIPVGSLLRIKKYCRKNDIIKEHGEFAVLVERPHGTYISHDVLFPSGRKTIFVPMNWEVVSYVSQR*
Ga0070746_101712013	F069451	GGAGG	MKPGDLVRIRKTAIDAYSTLWFINLAERKAPLLLMEKINKQHWKVMRPDGTDCFLSENKLTKRMW*