Scaffold Ga0070746_10032117

Overview

Basic Information

• Taxon OID: 3300006919
• Scaffold ID: Ga0070746_10032117
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2820
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079339	Metagenome / Metatranscriptome	116	Y
F082763	Metagenome / Metatranscriptome	113	N
F100992	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070746_100321172	F100992	N/A	MSNTSAKGRYTQLMSWLKGFKSSPVSNFRKQQEKKKSNYKQKR*
Ga0070746_100321173	F079339	N/A	MSYLEYRKNVYEDLLKEIDKNDDIKSLRKHIVKEINHLNYLKSYE*
Ga0070746_100321177	F082763	AGAAG	MTAYLEGFVTKMIEQYIPEGKDTIAHVDCREYMYEYIFQLIEEEKIPRKLSAIKYLCMNYKRFVYTNLSMLN*