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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006919 Open in IMG/M |
| Scaffold ID | Ga0070746_10008947 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5736 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (19.05%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010128 | Metagenome / Metatranscriptome | 308 | Y |
| F015092 | Metagenome / Metatranscriptome | 257 | Y |
| F049552 | Metagenome / Metatranscriptome | 146 | Y |
| F074752 | Metagenome | 119 | Y |
| F082690 | Metagenome | 113 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0070746_1000894713 | F015092 | N/A | MIKKIKSHLLTRLFIKWVNDEFDVETLETSKLMIQQRQDNISSMIDKTNPPQPIGFRY* |
| Ga0070746_1000894716 | F049552 | N/A | MEFWKVIEQMNFNGRGYQQAGRWLVEDSGLTFSQIKEVRNMAARKVNALYKKFRDDVRIGSDDGFDDVLWQTVANGYESFHNCTAESLTEMYDENRYTESFAYAFHAVDEIEDEQFAANKFLKRERAMKRIEEMKKYGGGFDQKLIAAFEHADNNNKRKLAKGFPEIFEHLVD* |
| Ga0070746_1000894719 | F010128 | N/A | MTKDNPTKPGGMRRFDELVAIKNVFGNDSVLLEELVRVMSNRDASYLFKRVAKSFDVTGALNKELDIINQRNNNE* |
| Ga0070746_100089477 | F074752 | N/A | MILVEQETANISFDMEGDPYFMVGETAYYLNEFIKVPDGEFDGVTHITNVGGIGIKIDEANEEVEYSIFTN* |
| Ga0070746_100089478 | F082690 | N/A | MMENKECVMCGGDAGKFGNNPAPLYHEGVCCDECNIQVVSFRFMINQIPE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |