Scaffold Ga0070746_10000021

Overview

Basic Information

• Taxon OID: 3300006919
• Scaffold ID: Ga0070746_10000021
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64321
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (20.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010243	Metagenome / Metatranscriptome	306	Y
F060928	Metagenome / Metatranscriptome	132	N
F092854	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070746_1000002115	F092854	GAG	MYLYNAKVADADEDYQWKHPSDIEHPLQPGYPGDLKGFPYDSSQNKLPPAYTRKRSVAKPPF*
Ga0070746_1000002125	F010243	N/A	MSKSIFILETRPITKGTRGERINKVVADSLSEAIEMFSTIKQLRPDQLIEIYKVYEQPTDAK*
Ga0070746_1000002127	F060928	N/A	MKKAELHDLVLETVNEYVNEAELKTGDNEFTIKVDVNRNPTKKGIKIQLIPKGDTILNDPDEKIDVNEKVQSAMNTRLKKYDLQVNIDPDIKQATDNPNVLGYYIPLNQFKNLITKALKGE*