NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079216_11969096

Scaffold Ga0079216_11969096


Overview

Basic Information
Taxon OID3300006918 Open in IMG/M
Scaffold IDGa0079216_11969096 Open in IMG/M
Source Dataset NameAgricultural soil microbial communities from Utah to study Nitrogen management - NC AS100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location
Location NameUSA: North Logan, Utah
CoordinatesLat. (o)41.7655Long. (o)-111.8143Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030872Metagenome184Y
F079686Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0079216_119690961F079686N/AECGLSPDEPGRIVLIDDGRPAEGFPDDPGERCERCGRHLWCVIRLVYHEEGEGGLS*
Ga0079216_119690962F030872N/AMNRCLGTKRDNSPCTVSVEPPQTFCWWHDPANADARKQAAARGGKRAGRGRPQAELSDIKRRLSDLADDVLEGRQDKAVAAVASQVLNVLLRAISVETKLKEQLELIGRLE

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