Scaffold Ga0075472_10057881

Overview

Basic Information

• Taxon OID: 3300006917
• Scaffold ID: Ga0075472_10057881
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1846
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F012669	Metagenome / Metatranscriptome	278	Y
F016528	Metagenome / Metatranscriptome	246	N
F028145	Metagenome / Metatranscriptome	192	N
F045700	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075472_100578812	F012669	N/A	MNEQTYMKLGDVVKRPVFDVKNINRENPRFKHLVDSYQKWNSDNDIDEPRSTYENDIIECLGHYDLDGFALAQHLKDYVYVEPDSELVHILDDVLFVKSSLEREMLAQWVKENFLTISDDVVGKKVNAKQGFRKYENHYITGIKPETYQVTISDDPKKYGGYIVGFESVTFVD*
Ga0075472_100578813	F000962	AGG	MNAHVPEEIKSKYPYMEFRGKQRQMNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKVS*
Ga0075472_100578814	F045700	GGA	MNIRPSQCFECETGTYKDVTVNYFSQLSGGRSLVTKDVTIQRCDTCGAEILDSKASKIIESNIEHNFLGYYERTRSRRN*
Ga0075472_100578815	F028145	N/A	MKLFLVFFINLALSLLSSILLYKLFKVDVSPTIISIGLIVAYMCLPQRFHDWIAEK*
Ga0075472_100578817	F016528	N/A	MINNNELFAKILSENPLPYRFGDKVNTNRGIGYISGYNFKEREKTWKFTIRPFGLTNYYIDVETVYGKTD*