Scaffold Ga0075472_10023180

Overview

Basic Information

• Taxon OID: 3300006917
• Scaffold ID: Ga0075472_10023180
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2834
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004760	Metagenome / Metatranscriptome	424	N
F010603	Metagenome / Metatranscriptome	301	Y
F041077	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075472_100231803	F010603	AGGAG	MSNEFYRSPIKAKNKAVRIDAQGFTNVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT*
Ga0075472_100231804	F004760	AGGA	MPVYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFRSQYTPDSIKRAAIRRK*
Ga0075472_100231807	F041077	N/A	DRKEVEQKTQAELKSAWDKNLLDEVEANPELKDSTSTLYKAVSEMLQNHAILRNYPAGIRDAVGIAKVKLQAESASDLSKKVAEYEKELSQLRKATTPASGQPKGPAKTKAFHELTLDEQERELMKMASEVDRG*