NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0075472_10023180

Scaffold Ga0075472_10023180


Overview

Basic Information
Taxon OID3300006917 Open in IMG/M
Scaffold IDGa0075472_10023180 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2834
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004760Metagenome / Metatranscriptome424N
F010603Metagenome / Metatranscriptome301Y
F041077Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0075472_100231803F010603AGGAGMSNEFYRSPIKAKNKAVRIDAQGFTNVIEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT*
Ga0075472_100231804F004760AGGAMPVYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFRSQYTPDSIKRAAIRRK*
Ga0075472_100231807F041077N/ADRKEVEQKTQAELKSAWDKNLLDEVEANPELKDSTSTLYKAVSEMLQNHAILRNYPAGIRDAVGIAKVKLQAESASDLSKKVAEYEKELSQLRKATTPASGQPKGPAKTKAFHELTLDEQERELMKMASEVDRG*

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