NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070750_10055470

Scaffold Ga0070750_10055470


Overview

Basic Information
Taxon OID3300006916 Open in IMG/M
Scaffold IDGa0070750_10055470 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1908
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F003020Metagenome / Metatranscriptome513Y
F004988Metagenome / Metatranscriptome416Y
F030928Metagenome184Y
F083388Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0070750_100554703F000720GAGGMTLIKENNKVRKEIPNRMMSATFALPIDGRRVVGIVNYTATDSGLMPLAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEDIIMGKQPEKKQRELSTDPYAMKE*
Ga0070750_100554704F030928GGAGMREWLKTLEAYTSFSILGFTIFICLIVIVVNCKYIIKLESTIDTMWHEIEQVKETNIDLYQFIEEHKNDFD*
Ga0070750_100554705F083388AGGAMVGMLMQKRISNIEWVITRCNPEFKKVWERKLEQLINRRVEMAYERMVENARSVH*
Ga0070750_100554706F004988N/AMVKLVETICPRCNGNGYIVIENKDIDCPMCEEEFIHMGGKVTTHNGYVMLPIEQTRKNVEGGRESIARWSGETLPEKGQ*
Ga0070750_100554707F003020AGGAGMPDTSSFKSVSVSVTTHNQLKTLAENRFEVPVSIQKVIDFLLEKELKKKNGKTR*
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Institute for Fundamental Biomedical Research
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