Scaffold Ga0070750_10005622

Overview

Basic Information

• Taxon OID: 3300006916
• Scaffold ID: Ga0070750_10005622
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6797
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005819	Metagenome / Metatranscriptome	389	Y
F006971	Metagenome / Metatranscriptome	361	Y
F022417	Metagenome / Metatranscriptome	214	N
F027815	Metagenome	193	Y
F028777	Metagenome / Metatranscriptome	190	Y
F050395	Metagenome / Metatranscriptome	145	Y
F081225	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070750_1000562210	F006971	GAG	MIYQNIEYKKHQKVKFVIPTDLRIIDPQTKKILWKYGTIQLFANNKISAWVLENNTKEPIRISLFCILPVH*
Ga0070750_1000562212	F027815	N/A	VASLDKDFILPDNLITDNPVFIDTSQEFENDCGDACKI*
Ga0070750_1000562214	F005819	N/A	MDYIDDMSLALPNQQQVGESNIDFKRFQYYLGLGAGRTLPRVAQNFSLSERRIYQISAKNQWLDRVKAINKMLNEQIIGEVFAQVGETARDLANELKPVIFRIINEINERDLASLNPTELKGLLDVCYKMISQIYGLGTPQVTVNHIEQPQIKFKWDWEQDDDTFS*
Ga0070750_100056224	F050395	AGGA	MYPLKRKNKFNWAYKFLYWNGDENIVYLYTIETKEGFQVAESAAWGNATFDGCNKMKYIGKNKMEVENGTNA*
Ga0070750_100056225	F022417	GGAGG	MAQMPKFLEDYTTVDELINKMNTEYPECRLIAEMIGYGDDWVIFKSSFYETKEDTEPKAVAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKDAAPEKSNLDKKIEVLEAEGLVTDISHKAQAVMNSIKDFAMDCTAQDIDKARLYTASALTELGIRKEDVSITNLQAVKDKIQDISNSEKSA*
Ga0070750_100056226	F028777	GAG	MLGLFARNKHSFTEMLFLEKDISEFRKIRYILEVEGRICSLDPEFSTSGNLRKAVHRLNRDYNFKIYKEECNCNFKVKGKLNMDGTPRKHYAYIKDWAS*
Ga0070750_100056228	F081225	N/A	MMVGFIGTVVSIVGGDMVNANNRRDFKAEEYDLYDVRKARPFWNQVCEANNWQVIKDEEDFAEDYVCKILNNLYVMELQVVGYWHNFDKDYISNLWISASKVDNLKKKAQAKNTRSGLIFLNCVPNRFIGIDIEEIKESYKVNKASGEKSYKIPLQKIYYLYKELLDRNFCDCLENHIDIMEQGNGRIPMAQRNVNLRGKNGICC*