Scaffold Ga0070750_10001018

Overview

Basic Information

• Taxon OID: 3300006916
• Scaffold ID: Ga0070750_10001018
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15738
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (45.45%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015082	Metagenome / Metatranscriptome	257	Y
F036202	Metagenome / Metatranscriptome	170	N
F036676	Metagenome	169	Y
F041151	Metagenome	160	Y
F041163	Metagenome / Metatranscriptome	160	Y
F097241	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070750_1000101820	F041151	N/A	MTTAKDLINELVALRAERDDLDAREAFLKDQLQGAIALGELDSYETDDGTYEFDNAKYIRCTRNSYKHSKEAEKAIRTIKEQDIDAGLAQRNVTIYYQLRMTQS*
Ga0070750_1000101827	F097241	N/A	MNFRNVVKSVPSELIFTGYTWETTREHYFMRHANWSKASEVRELRKLYAARLWDECGISVDLEEGFQ*
Ga0070750_1000101829	F015082	N/A	MTESDTYWTFATAYQHGGGFMQALAQAGMRADPQNKSRILVAFPELIDLYGPTTKLHTQLRSGASN*
Ga0070750_1000101833	F036202	N/A	MSLKLFDYDNRTKYVHQVFDNKERISPKTQYRLAGSQNFAETELGDPRFHYSPVSSENAIGMYDSEGYYCTFCPPVQTPGVKNPIGRFVRHPWAEEERQRQEAFS*
Ga0070750_100010187	F036676	N/A	MERWLATSGAVIAVLTAIVGTTIAVETRYAKSAEVKAQLEEYYAKQLKLRILEIDLKPQQTPSDRALRQYLMQELGKSSR*
Ga0070750_100010188	F041163	AGG	MAVRAKSGTARIEHQPGKPKLTRQGNSKRSKPRGTRKLLRGQGK*