Scaffold Ga0070750_10000817

Overview

Basic Information

• Taxon OID: 3300006916
• Scaffold ID: Ga0070750_10000817
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17313
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027807	Metagenome / Metatranscriptome	193	Y
F034404	Metagenome	175	N
F040054	Metagenome	162	N
F048234	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070750_100008171	F048234	GGAG	MQIAIRISKQVDDWDEFVDELEGIERTAVADDYDEDTKVVTLLVDRESIDDYYHPIGGRYPIEFEGRTEWVEEVGVCVHSCKWHGHDIINAEQVCSELEGFTYVE*
Ga0070750_1000081712	F040054	GAGG	MEKMPIMSMPLPDGGAVVCRVEAIMAATTNMQNNQLTDVYIDVACPEGITIDVDIDSFTTSWLAALLTTIDDWRLEHGMH*
Ga0070750_1000081719	F034404	GGGGG	MLQTVTIDWRPVEQGSMPRNEGSYLVAFDDGAVETYPMSHQDIKRGEVRDGQTHGLYWAEGIPSPFDYGKN*
Ga0070750_100008172	F027807	GAGG	MSSNEFVPPKLIKSEIIEELDSLVGQLRDLTIRKPKHPQEAQMDARLADFLELAEQDFIRGWTDWEEGIQHKKGQSEAYNAGYADCYEYENGRGE*