Scaffold Ga0075424_100386556

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0075424_100386556

Scaffold Ga0075424_100386556

Overview

Basic Information
Taxon OID	3300006904 Open in IMG/M
Scaffold ID	Ga0075424_100386556 Open in IMG/M
Source Dataset Name	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1491
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location Name	USA: Tennessee
Coordinates	Lat. (^o)	35.8444	Long. (^o)	-83.9599	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000329	Metagenome / Metatranscriptome	1287	Y
F004984	Metagenome / Metatranscriptome	416	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075424_1003865562	F000329	GGAG	MESKAMVAVQESWPVSGASLQVGEPVTLVIEDERFFGWVAPASHASSLVCVPIEFKRGDTRVQELIPVENIQRLRDYLHAHPELRTAKEQGAPLRKG*
Ga0075424_1003865563	F004984	AGAAGG	MSPTAEHIHDATATFGECQRLVHSGRKQAGIQYLMHRWRAIPAELQTRFLHDEFLTLPVDTQARITDLLLVRSREAGIAERTAALRHQMRADREQTARLDAVAAGITAAYRTRWHRLGGLAALCALAALLTLLSTTF*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.