Scaffold Ga0075424_100234638

Overview

Basic Information

• Taxon OID: 3300006904
• Scaffold ID: Ga0075424_100234638
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1949
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002850	Metagenome / Metatranscriptome	526	Y
F004352	Metagenome / Metatranscriptome	442	Y
F008441	Metagenome / Metatranscriptome	333	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075424_1002346381	F008441	N/A	RELLKAAGRARILAVVPGPRMPDESGGDRQAQLCEAYADAGLLWAKVVGSSLALAGALIERGEWEDVRALAGFLAGAGEESAATELRIRLGGAVWEEHREHLRTISNNMPPAAIERAINALRAILREVPEEFPDRNREVNCFLPPLASAVYAIMRKQGAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFDGICRRPGGPTT*
Ga0075424_1002346383	F002850	GGA	VTGIHADIDALKGLHDALARYRHAQRDVTARGEDQLTATRASLETKASRLRAQLELGQAEYTACQDRAAQADPDDPVDCSGHARAVQQDSERLEQIRLWQQRIDAEAGEFSGIAGRFADLLENELPRMEEHLVAIIASLEAARRVRAPVPGP*
Ga0075424_1002346384	F004352	N/A	MTARPDQNGDQQLRLLGDAWDKAAEHWRDGPARQFGTAQLTPLLQESRGYLEALRALMDLLETAERETEG*