Scaffold Ga0075426_10020288

Overview

Basic Information

• Taxon OID: 3300006903
• Scaffold ID: Ga0075426_10020288
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4749
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026411	Metagenome / Metatranscriptome	198	Y
F027294	Metagenome / Metatranscriptome	195	Y
F041398	Metagenome / Metatranscriptome	160	Y
F080432	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075426_100202884	F026411	AGG	MKGQEQKDSAALMGTSPAMECRAEFIFYARNQSRKLGSVEVLGDYACDFRRPDWAHRWTDWNSGRNHYLNLFLCAKHARELGLL*
Ga0075426_100202885	F027294	GGAGG	MRVFRGFAIALMLALISLGIFILYNSMARRSAAAADSVVAGAVLFSLALTLLYYISRPTIK*
Ga0075426_100202886	F080432	AGGAGG	VDIQKGEQWRCQNPVCRSEILVTTSSRTQGGSNPRCSCGEIMKKPYAPPGLRSFESEVEARVKLEASRN*
Ga0075426_100202888	F041398	AGGAG	MTKSRTQVAFAMVVFSAVVAVFSGVVAVPFLNAGKHSLPAVPSNGVVTLIADGGDPQPPPTPLPWLV*