NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066372_10208642

Scaffold Ga0066372_10208642


Overview

Basic Information
Taxon OID3300006902 Open in IMG/M
Scaffold IDGa0066372_10208642 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1072
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022754Metagenome / Metatranscriptome213Y
F036736Metagenome / Metatranscriptome169Y
F067823Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0066372_102086421F036736GAGGMDKLNEMLIGSLALIGGFITKRIFNNHDTLSERVTALEKVVLTKEDLNTIERNVEMIVSHLITKGKSSGQ*
Ga0066372_102086423F022754N/AMNELIITIMLIIPSPHKLIDWSVNEIPTQIQIIHKSGLEVSYTATPVSCKFQPRHDREMVFRSPNNRCYSVYDLSSPRFVRHPNHWYKIELPQ*
Ga0066372_102086424F067823AGGAGMDIAAIFEGQGWFAIAGQIVLVFTAVTGALPDRFVQKIPVLGTLWPIFNWLAGNVFNNINHPKGMAAQNEVEK

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