Scaffold Ga0066372_10208642

Overview

Basic Information

• Taxon OID: 3300006902
• Scaffold ID: Ga0066372_10208642
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1072
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022754	Metagenome / Metatranscriptome	213	Y
F036736	Metagenome / Metatranscriptome	169	Y
F067823	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066372_102086421	F036736	GAGG	MDKLNEMLIGSLALIGGFITKRIFNNHDTLSERVTALEKVVLTKEDLNTIERNVEMIVSHLITKGKSSGQ*
Ga0066372_102086423	F022754	N/A	MNELIITIMLIIPSPHKLIDWSVNEIPTQIQIIHKSGLEVSYTATPVSCKFQPRHDREMVFRSPNNRCYSVYDLSSPRFVRHPNHWYKIELPQ*
Ga0066372_102086424	F067823	AGGAG	MDIAAIFEGQGWFAIAGQIVLVFTAVTGALPDRFVQKIPVLGTLWPIFNWLAGNVFNNINHPKGMAAQNEVEK