Scaffold Ga0066372_10208440

Overview

Basic Information

• Taxon OID: 3300006902
• Scaffold ID: Ga0066372_10208440
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1073
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y
F061282	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066372_102084401	F003285	GAGG	MPDQESFLQLKSEIQTLKIKDEYRSKELDALMSKLDDTSTKLNTLSDNISRLLAGQETHKINDNEVRDELKILHTRIGDLHDKCTEMIDKTETRISSDISLLYKKVDSLERWRWITIGVATAIAWLLTNIIPKFLNN*
Ga0066372_102084402	F001334	GGA	MKFKEYLQLNADDSIEQIMGGEWILKSRTTWKATDDEDNKLEIHNDGHDPELQGESWSVHTNTFAPKAFAFFCKQFIKEAKPSEVTHARSRIFPAT*
Ga0066372_102084403	F061282	N/A	NIATRGIPLMKKPPKGLVMKKFGGIDVFALDPTHFQKSRFGKKKYTRYSGYVGEDKAGEYIRAFARKHPKKPIIVMDSSTGCMQYLRHGSGK*