Scaffold Ga0066372_10198462

Overview

Basic Information

• Taxon OID: 3300006902
• Scaffold ID: Ga0066372_10198462
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1097
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002744	Metagenome / Metatranscriptome	533	Y
F049554	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066372_101984621	F002744	N/A	SVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDGPNDVESYYTRPTNETAGATAANTRTEGGSMTIQGGNEIRSLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAVQPTYTGLGSAANAVTGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRT*
Ga0066372_101984622	F049554	AGGTGG	MPHLETDIQPSKVKSVSVYNVGDYGNDLFLPFTDVGLTETSITFSTAVLTRDTEDSNQPMDDFPAIYSDTDTGVLQNEGNNTAFSQTYSYNPDMTAIIYALHLHFPAAVICSAFTSGTLNVGALHLKITERSTNDRLLYENTFQSGAANLTGTGTSLHIFQQDVVETILVRK