NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066372_10104217

Scaffold Ga0066372_10104217


Overview

Basic Information
Taxon OID3300006902 Open in IMG/M
Scaffold IDGa0066372_10104217 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1468
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001493Metagenome683Y
F006423Metagenome373Y
F030241Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0066372_101042172F006423AGGAMKTFKQHLNEKTEYYLDASQDNTEKYVAYDGSYWYTGKIGIRGGDRYLKFAATHGKNSYFEKAKLKKTTPEKLEKDVGFTVDFKKLYKR*
Ga0066372_101042173F001493GGAVVHKMKTFRGYLQERFQEWKKGSAPAWTESLSTMLFDLPRAGLKDVKIPLAPSILKRIWSKPVRITAFHLTDFDGVKKLKGMQKGKRSISAFFNIDDIIIDSGIKTEGGYVVELIGDVLAAAEDDISSQPDKSGRRWLTLSTLINPLDLSWSGDGLGGGAKLKGIEKDIEKLLVDIVTKHSDITPLPNINKAWGHLGQSTGGKEKSLIIKDYIDGMEVIMKKYSKPLKSILTGYTKKKTLEPDPDSGDVAMWDELVVNNFTIQKIHVSPEFSPDFAPLEKGEGGDRMYTFGDRDADIEGFPFELYYEVGDMVDYINRTLR*
Ga0066372_101042174F030241N/AGHVGRNKWMPVSNGFKNKAQAQKWAKSQDKVDIAARGEISGA*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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