Scaffold Ga0066376_10729814

Overview

Basic Information

• Taxon OID: 3300006900
• Scaffold ID: Ga0066376_10729814
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 542
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005011	Metagenome / Metatranscriptome	415	Y
F014983	Metagenome / Metatranscriptome	258	Y
F015479	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066376_107298141	F005011	N/A	RLTISFTKLIIKMKGETTMQKTINKYQSKFDRLMQSIEKDKILKKMPGNATAGIAVQMIKDLKNYLKVNKA*
Ga0066376_107298142	F014983	AGG	MKEETLTNQKETNRAIKAAVDQAKKVRTHCASCGCLPKPDEWSHVTNYCIDCA*
Ga0066376_107298143	F015479	N/A	MKILMVLATGAIITFPMDKSIKPDCFSQGYSIMEKISRYQGPGPEQGWILNDSKIEI