Scaffold Ga0066376_10492794

Overview

Basic Information

• Taxon OID: 3300006900
• Scaffold ID: Ga0066376_10492794
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 692
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001135	Metagenome / Metatranscriptome	767	Y
F082803	Metagenome	113	Y
F085809	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066376_104927942	F082803	GGA	MTNIIKRGLDLTYLRGQVVALYKLMANLQSTINKLEAEIKEGENDNNNI*
Ga0066376_104927943	F001135	AGAAGG	MTTIIYKDKKYKLPFVVKSHSAAMVKRTNPLSGQSIDLPGFAACVYDYTMFMSEATEAKDRQTNQEPGFSDNQDDWQIVRNGLNFFRQYFAKEYMVLLD*
Ga0066376_104927944	F085809	N/A	MFKTIKWNTGSAATRFRHTKKKKKRNKAASLQAGGPAPKESGLKHKTLLGLTIYKL*