Scaffold Ga0066376_10418581

Overview

Basic Information

• Taxon OID: 3300006900
• Scaffold ID: Ga0066376_10418581
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 765
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001242	Metagenome / Metatranscriptome	739	Y
F078812	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066376_104185811	F078812	GGGGG	MTQDYTMVWPVRRTVSEDIIRMKYSDAVANGEVEYTDLTDIDDIMHELESAGQV
Ga0066376_104185813	F001242	AGG	MRNKEMILTLKGLTNKGKNRIREHGDQWEVMETTLTPKPPLPPIKSLKTGEIRWLDDINFEFRLESTT*