Scaffold Ga0066376_10261142

Overview

Basic Information

• Taxon OID: 3300006900
• Scaffold ID: Ga0066376_10261142
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1020
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001712	Metagenome / Metatranscriptome	648	Y
F002529	Metagenome / Metatranscriptome	551	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066376_102611421	F001712	GGA	MAASAGQPIATRAQNFINSLSGRITGYNPFPQTGTVPQTISIDGIFNKWSGIGLGSWIYGMIPMKQLPHKAKAKTLGKALLSGGILGGLFSTGNPHNTNLLTTSRPTLALSSTEVSYT*
Ga0066376_102611422	F002529	GAGG	MTYGYDDATFTAMSGVTEVQINSGASLTAPDPAHGLLAVIPYMSELGAFTTNQSLFCAFRVQSDDVAVEPKKFVLPNVNTGDAAFTSVAAPALLAYPIDTPLSGGEHINYYGQPLVTNTVEPGIGATVIYSTTGTNGAESYYQRPTTETAAGTAINTRTQQ