Scaffold Ga0066376_10141324

Overview

Basic Information

• Taxon OID: 3300006900
• Scaffold ID: Ga0066376_10141324
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1473
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD10-C281 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F093988	Metagenome	106	N
F095617	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066376_101413241	F093988	N/A	MKVNRHDRLHSVFNLMLPKTIQYKRNIIKIRYMGRKESQDLDCVGMFVPADNEILIYKNQSMKNVLITFLHELYHLLCSKDGINVARLGEEKLVDKLSESFVRLLIHNPKLLGVFQKFLK
Ga0066376_101413242	F095617	N/A	MNKITLKWEEILAGATTGLTREIESLRQGIDWGHGANFDTYTKWGMTISGALAEMALAKMCETYFSHSVNNFHGSDLTINGKSVQVRSQLMSKKTHNLIVRKNRKKDDYYFLLLDDFPTFYCAGYAAPQNVERIGQWTNFGHNSRPFVWSIGKDKLTPLEKFKYER*