Scaffold Ga0066376_10081426

Overview

Basic Information

• Taxon OID: 3300006900
• Scaffold ID: Ga0066376_10081426
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2031
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031898	Metagenome	181	Y
F072444	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066376_100814265	F031898	AGGAG	MESTVLKDFQKEIEKMNEDDVRLKTIRELEKYRERKDLGIRNYPKSCMERMLSDDQVHGI
Ga0066376_100814266	F072444	AGAAG	MPERENNSFWEIAELIEREMSVLRKMRPAGPMEDKEKEHERRTNSQS*