Scaffold Ga0066376_10074405

Overview

Basic Information

• Taxon OID: 3300006900
• Scaffold ID: Ga0066376_10074405
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2139
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029898	Metagenome	187	N
F033643	Metagenome / Metatranscriptome	177	Y
F069450	Metagenome	124	Y
F096037	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066376_100744052	F096037	N/A	MKTTVYAWGAQVSNVLHIYAGMTTQKDLGIRLNGVKQIIVGAADSWFGGPQNSAIGAWNLDLIYADSSQNYSRHKEQRAINAGWAVEQKYRDASLPVRSLNSNRAVGLGSVQKYLDRTNSVYGHVLLHDTELDTNLNGCVFEAIESWIKEKVQEKPNLKRKFEAALIAKQQKQALIANITKVLGLEPVLA*
Ga0066376_100744054	F069450	N/A	MLDKFGASAILVSVMSNIDQIYGVPSWERVRELKKLEAQYPKADWSEGSYNDQIAKLADKKRKRYGTTCSYNGY*
Ga0066376_100744055	F033643	GAG	MFSASEIYPGFNITFANGWEISVQWGREHYCANRDNSNKKSRTSTTAEVAIFAPDKDGFPREWWSYDEDINRVVEQPEETYVNGHLTTDQVANIMAIIAKRPSPLVGVSQNSA*
Ga0066376_100744056	F029898	N/A	VFRKIVLDIVGQIGYTIDSVMRKIIEMIKKIMKKSPVRTQELTYQREYDGEVKNYLVNIFEDWDSYYVGYTYDTHGVNCGVKRFNKGNIQKMKAAKRNFALVNV*