Scaffold Ga0066376_10033420

Overview

Basic Information

• Taxon OID: 3300006900
• Scaffold ID: Ga0066376_10033420
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3404
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023368	Metagenome / Metatranscriptome	210	Y
F031532	Metagenome	182	N
F053341	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066376_100334202	F053341	N/A	MNTLNKDTHYLIEHTGSGQKDLAKAILLRAFLDSVGHLGSNASMGIGEMEILQDQAKNFINSSRERFKLICELADAEPEYIVSLHSNLTYNYNCGKLKNLNTKYIIERLLEKL*
Ga0066376_100334204	F031532	AGGAG	MSHRITKKKIKTFLSLRFRKEPLMMYDDTLDVAIEVIQDFLNCDPLDVGKLQGNTYDTIYNIEKETLQEDWVKGYNKWGETQ*
Ga0066376_100334205	F023368	N/A	MHKYNKATTKYKDVPMEDKIFSYLDKQNTNEADKLSMLLGYLSMPTMCYSWVNEDDFNSLLEKYKIDITPYVKDDERITTSVKSEIAGEMFKLIHAGKYKKKNLIKALRDKFPEVNSGVICRLIKKNMNLRLIEIDRTYKTKPYVIKGKYFIK*