Scaffold Ga0066376_10005444

Overview

Basic Information

• Taxon OID: 3300006900
• Scaffold ID: Ga0066376_10005444
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10797
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (94.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Southern Atlantic ocean
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038274	Metagenome	166	Y
F046014	Metagenome	152	N
F070566	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066376_1000544423	F070566	GAGG	MPKIDFTLSLWAKTGSIFEGVQVLESKIVKRPVKYNVFPSKEGVPIIILHEDEWKIIKNRKRHKKVIGEIINKLTEDL*
Ga0066376_1000544424	F038274	GAGG	MKQEYKLDKHNGEYVLVSIDSSSPTIRLGTDDLEIAKARAKPHMKFI*
Ga0066376_1000544427	F046014	GGA	MKDKSEKYGKLTKSEDTMIRKRAYLNKPQAEGLIQIFRRNQLLDLLVYTAIYTKNKSPHYKLCIDCPIDTHPRLSNKLQDVLHTLVDKHRDALQQLEWEEYDDAETPVETLGLTPDFKEYVKGKEKENE*