Scaffold Ga0079215_10834394

Overview

Basic Information

• Taxon OID: 3300006894
• Scaffold ID: Ga0079215_10834394
• Source Dataset Name: Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 649
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil → Agricultural Soil Microbial Communities From Utah And Georgia To Study Nitrogen Management

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.7655
  • Long. (^o): -111.8143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007998	Metagenome / Metatranscriptome	341	Y
F042770	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079215_108343941	F042770	GGAGG	VQKFLDAVVLGAKTVMTRVELGGTLFLVAVIGVLLTSRDEGDKSS*
Ga0079215_108343942	F007998	AGGAGG	MFDSLTAKVVTAVCAVVGAIALLGTFLLTLTGGSAYLQFGLALIFFAMFLVGSYWWMVFGPGRGL*