Scaffold Ga0073928_10006155

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10006155
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16312
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019891	Metagenome / Metatranscriptome	227	Y
F021873	Metagenome / Metatranscriptome	217	Y
F050601	Metagenome / Metatranscriptome	145	Y
F057937	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000615510	F057937	AGG	MSKIIRTFHNGKNEEVGRLTFEEKDDRLHVRSSAAPGIDRRFRTEKGAADWWQSNVDPETGKIRRQRDV*
Ga0073928_1000615514	F021873	AGGAGG	VENPFDIMKVLSDDSLAWLEAAEELSAARLRVWELLADSPGEYIVFNQETKTLVAHFSIHETPQIPEWWRQEDEYVETPQPAVAALNNDSAFGDNAALNDDSAFDDDDFDEYVHVLQPALA*
Ga0073928_100061556	F050601	AGGAG	VHYEQQKAMQRELNERIPPAANGDPQNELRHVVNSQRLSGKSFDQSVAFAISVISKRYPQFTPRILPPR*
Ga0073928_100061559	F019891	AGG	MSDWSRDAALRFAALLKTKQIQEARVIRDQNDLAQSAAKTWADLCELFKVRCTEFNAEPDVAGILNCDTTRHQELKITRTDNAAMLRGTFDAKRHTIHFMGPNIGKEKAEIKIEIIAGSSTMRFVDSLQRKLDPQDIVDISLTDLLQLN*