Scaffold Ga0073928_10005755

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10005755
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17127
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (82.61%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F007596	Metagenome	348	Y
F023940	Metagenome / Metatranscriptome	208	Y
F046901	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000575516	F046901	N/A	VVVKGEKEQFLDWLSWGVESAAIRFPNETGSIRWPGVSLQEIFPQAE*
Ga0073928_1000575517	F023940	AGGAG	MKNAHLRFGWLTYVKSTERTTTSIKLRLDRFIGEVLPDPPRQAKAHFLSVIGGDTQISAVSAAISMGDRFMVEGPDVQPIRVCLERNAQCFKGSIQLAGRKKPLRHLIGMSEEFASGNMSAGSGRTLLAGSDKRFV*
Ga0073928_1000575520	F007596	GAGG	MSLRIRFRFDGKCSLHPPYDPARDGRPQQSNCEGCESLYVIHLYTKIAKRRAENENGILVRTSSGREEQHAIDEPGKLSNTENK*
Ga0073928_1000575521	F000208	GAGG	MRIRVTTRADLYEKRKQEHIERGYRIENERPIPANGFCYFIAMRETPVSDTVGELVAQAINGGRGSLRDW*