Scaffold Ga0073928_10002822

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10002822
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28726
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002349	Metagenome / Metatranscriptome	568	Y
F003467	Metagenome / Metatranscriptome	485	Y
F024046	Metagenome / Metatranscriptome	207	Y
F048525	Metagenome / Metatranscriptome	148	Y
F099744	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000282218	F048525	AGGAG	MRKQCLRILIALIGVAGLGMAVRGQVSDQIKVTIPYEFVVAGKTLPAGTYRVNRLGDTDEKTLVLSSLDSRARVMVPSTTVESTQADKPEVSFEQVGGQHFLSKIETADHLFTIPVSRSEILEAAARSRSGTSTSGRSDGSN*
Ga0073928_1000282219	F002349	AGGAGG	MIVCYANQCAYCRSSIVSGQRWVREKIYDPALNGRDPSYYRYHAEPFAGQEGSCWEKRQMELEIARTTARAA*
Ga0073928_1000282220	F099744	AGGA	MFLSSFDILRKDRRGKPILLAVVGDLETARLRLSQLASLMPGEYFVFDPRTHQIVAAMEDLRWQVT*
Ga0073928_100028224	F003467	AGGAG	MTWARVVTLIIKTVTAALVLGLLATGGYAQTAYRGKFTLAVETRWGSATLPAGDYTFTLPSHSAPYRLYIQGQGVSAIIQATTAELIVASKRPQLNLVDIADVYAVETFEAPDLGVTFTYWTPPQKHVARKEAHQKTVSQTASTTRTSENKTSIEVHIVGR*
Ga0073928_1000282240	F024046	GAGG	MSYDSKFPDPKNAWHRVLERLYHEDHILYARMNNFSTVQAFLATALAFTTSATTTARNISLIVSLFGFALSLFYISLGFRGVRVIQFWRAYLRLLESIP