Scaffold Ga0073928_10002668

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10002668
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30015
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (62.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000624	Metagenome / Metatranscriptome	977	Y
F000703	Metagenome / Metatranscriptome	928	Y
F000739	Metagenome / Metatranscriptome	913	Y
F002750	Metagenome / Metatranscriptome	533	Y
F013395	Metagenome / Metatranscriptome	271	Y
F086235	Metagenome / Metatranscriptome	111	Y
F099605	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000266813	F002750	N/A	VHVRDFLQRLLQGRYVGLLEGEVTRLRAENRALTNSLLGIAGFPPVEYPEPAKPQPVARLRKRSWHQIQAWKEVEAGSNQVPK*
Ga0073928_1000266819	F013395	N/A	MRRALIGGALLLSSAAITARSKTESLLFVFLRVDREQDIAILRPMIAPDIGVQLDSGPRHLESGAVLTCEMLPREHEAIVEGQVAKLSEIVLDCGDHKFVVKTLDFRPQLK*
Ga0073928_1000266820	F000512	AGG	MIQILRETHDTPESVAHNLELAGGINRFREPNYRAVWGWNRLAWIGGKFEERDAATGSLLREVVELRQEPKYPAVNRWHIEKWLPPETYGSPRAWWAQTMEVEAGRSIPALGPYPARGEYEHCFTLEGPRGEFVQLTPTVAEHIARAIEWSRRHPRSAGKRALKDREQRQEQAYDAWAYDLLDEAVPAFHRQPFVTVA*
Ga0073928_1000266822	F000739	GGAG	MMTRIELWLKGLLAAAISGAAGGVLTGFAAVGIDPQHFNLQAGIGATFRIGLAAAMINAVIGVAAYLQKSPLPSGD*
Ga0073928_100026683	F086235	N/A	MQIASGISVLFTTLAFGHIMVHDTQHMMSHHEDNHFFIVAHTIIAIALGVLSLAGGFCLLTNRPRQNSN*
Ga0073928_1000266831	F000703	N/A	MLVREYRESDLAELRTIHAAQGFDYALPDLTNPLFVTKKIMANEGSVVGAALLRLTAEAYLLLDPRAGTPRQRWQWLLALHNATERDAWQRGLEDVHAWLPPPIANKFGKRLARLGWLRDDAWTPYCKKLAAHN*
Ga0073928_1000266832	F099605	GGAGG	MPNTTQSASWDFNPSDPVHLAATFSFDTEDTQDAAPVAAALAAIQARLASATVTATQPDGATISITVTI*
Ga0073928_1000266834	F000624	AGGA	MHNFGSAVVAGWLTTLVPVGLQFIVFLRWLHRRMRNDEITHAFVRDIATNHLPHIYNALQKIAAKQGIELDETPLVHFVDLNHRLKRRGD*