Scaffold Ga0073928_10001803

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10001803
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39676
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (85.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010268	Metagenome / Metatranscriptome	306	Y
F020407	Metagenome / Metatranscriptome	224	Y
F026653	Metagenome / Metatranscriptome	197	Y
F047207	Metagenome / Metatranscriptome	150	Y
F072557	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000180310	F026653	AGGA	VLLRLEAFVFLFAMMLAVTLEGAWVYWMCGHPRPYATTEGSLNFVGEWTGLALPQGWLLGAFVLIYCVTAMFVPPGRWTDNEFLHNRRAFLRLWRWAMALVAMQGLTLFLGRAAATV*
Ga0073928_1000180311	F072557	GGAGG	MLREDFEKRPDIGFRRTVADHLLEPLSPFDANSVRRPQRWFVLSSIVSLAAVGSVVYFNFWN*
Ga0073928_1000180314	F020407	AGGAGG	MVKQRFLTHFKPWLFAVTKVGGLIVAYQLFDAIRTYLQYAPLNSVDVVVAATVALLAIGLLCGLWAWGEWCWFKLRSLRRFCGELKPAFNNRRRPRTVRTSRSAVGTMV*
Ga0073928_1000180315	F010268	GAGG	MATMIASPPDEKTSQASSRLAGKGNRRARPAGEDETMSGARFFLPKSGVNGHAPELGREFSNEGEARVEALKLGMTYYSLQEWRPVADFAGKNPELKREPVTGKGTG*
Ga0073928_1000180342	F047207	GAG	MALTFAFLRTEFCMSGVVQSIRNQPAINPRLLPAIDQLLIAGIKLGPRKKHDAINKILQLVPEWKRGDCWRRIRQLRRTSALATPNAIQESEHPGNSGSSHRPFPRPWRPEDDDKLLDWAGYEPVSKIAQRLGRSVRAVRFRLGALGMSARVKDGWSQRGLRKLLRVSRARLRYLIASGMLRVRDRRITASSLAVFCERNIQAIDTCAVHLPKHAVGEEEAYSWKRAAKLLAGTVENVQDLISTGQLKLMDTFVTDRSFEDFCRKHGNEINMTLIDPATKKWLMSEYGVAATAASKILHRSQKHALVIRECRCGRKIAGNVYFRHVRHCRLLQAQSRRTAV*