Scaffold Ga0073928_10001725

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10001725
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40661
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (60.42%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007243	Metagenome / Metatranscriptome	355	Y
F022093	Metagenome / Metatranscriptome	216	Y
F033936	Metagenome / Metatranscriptome	176	Y
F034727	Metagenome / Metatranscriptome	174	Y
F079016	Metagenome / Metatranscriptome	116	Y
F087658	Metagenome / Metatranscriptome	110	Y
F095804	Metagenome / Metatranscriptome	105	Y
F103623	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000172515	F022093	N/A	MIEIPDSVADELNARKVSLETRAYEVALETTSADRSNKPDYQMSLMSCTPGKVKNLDSLGEPSLLAPDACRAWVIKRPSPFQELLDKGWQSRQKNPGPKS*
Ga0073928_1000172517	F034727	AGG	MTTDEVLDALGRYKKDSNDSDRQTATKLGITNPILEDWLSGKTRPQKSTLARLAGFLRRVGYL*
Ga0073928_1000172519	F079016	AGGA	MDSHEANGCAQELWGELIGIDDRTDQERTFTIYKRSGSLLVVSDTGCERLVGPDHGLSKTRIFQEVMYQFRVHAVRPKPSLYPLAD*
Ga0073928_1000172520	F087658	GAG	MPEALYFQITLEPHLKRSGLATGRKILFLAEVPVNLAKEASGAPEDDRMVFEAAERLAGNLTCMAMTGESSQPGEDEMRVSFRSTSGMSDDAKERHPDAEKDGVRIWLVGARPV*
Ga0073928_1000172521	F007243	N/A	MTSIHATVLSTERFRELYRVIVQLVPSEFVGPFERLRFKKNPYCGSFGTSVDKSWLTLDYRKDPGFKAGEAFPLRRTD*
Ga0073928_1000172532	F103623	AGG	MSTNESVYPRWEREDRVTRFFIGPSLPIYQVEEIKLIGGSMFLASASDKSNLVGQFESERNAKEACKRDFADKSIDPAAEIVGWGLNPRQKRR*
Ga0073928_1000172538	F095804	N/A	MKTLIIFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTVALQAQLQRFGDQVKGMNQPKTENNSPTPAPSVTGRS*
Ga0073928_1000172544	F033936	GGAGG	MLLENSGTIDAKEHDKIDSELCYSSSLEAAMNLILGHPAFVGEKATPSFKFITAARFLRENAPHAFQIGETDFPAQNSMDRWLWNLLDRNVDNTIH*