Scaffold Ga0073928_10001471

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10001471
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45085
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (71.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006249	Metagenome / Metatranscriptome	378	Y
F011714	Metagenome / Metatranscriptome	288	Y
F030262	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000147116	F030262	GGA	VATDPKRIELHLDADPCFAAAAGGAVRCLAEFAGMPEDVCREFQEATVRACLEAFELRPSSSHLIEFCRFEDRVEVVVDSNAGPAAIRLSRSVISQR*
Ga0073928_1000147117	F006249	GGAG	MKTRLFSCLFVILLSCISSFAQQSQPQMQPLTFWYEYTVNPGKEEEFMDLVKTVGQPVRDKLMADGVVKAWGVETPLLRVPGNATHVIWYAVADYAGVDQVDSAMRAQIAKLNDEATKSGAAKKGQKSGTSVTARLGEIADMSKVHDYLTRDLVIGFGPPSGSAALPFVRYNFVKVKAGRGSDYRKAWEKYNKPVFEKLAADGVVMAYGLSVEEIRTDGDFTHYVWYAVKDLASFDKVRAAFMADRDHRSQEEQDSLTSLFVGLQDVDASRSEVVRSLIFHLPTPK*
Ga0073928_1000147139	F011714	N/A	MRILMPEWRMAILGLLVIVCWSQGAGAQQSSKQQWKTLPFAIVRYNDDAPKSWNVYRGERKGIYLVRLWKRYLLIDTDSQSAFEIDPEKVKAEGDKVELAAADIPADPLETSEWKTKNAGPVLRHRFRFGKSGNFMELQIPVLPNGRPAY*