Scaffold Ga0073928_10001469

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10001469
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45097
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (52.17%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004512	Metagenome / Metatranscriptome	435	Y
F011789	Metagenome / Metatranscriptome	287	Y
F024668	Metagenome / Metatranscriptome	205	Y
F033936	Metagenome / Metatranscriptome	176	Y
F039750	Metagenome / Metatranscriptome	163	Y
F072646	Metagenome / Metatranscriptome	121	Y
F095804	Metagenome / Metatranscriptome	105	Y
F097720	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000146913	F097720	N/A	MANFSDSHSWMFHGFPELDPDAILRQRRPGEKVLATEEERQRAWWLWRRRPREMNVFVYGSLLGIGAMAHTPFLILGSLQLFCVFHAGYILFVLWVVGMFFAKEARYRRWKKDYLRAIARLAR*
Ga0073928_1000146930	F024668	AGAAG	MTAIGAKVVAVDNLGGRYRVIVRIGFPRYHGSFLTLKFGEQKPFTGFTHNGLLDLVYHEDPHLKAGQPFPLWTIQ*
Ga0073928_1000146931	F004512	N/A	MTPIPAKVLTVAKQSSQYRVLVQIELEKYVGSFHTLVFGKRRPFTGSCYKGQLDLFYYRDPGLKVGKPFPLWTIK*
Ga0073928_1000146932	F072646	GAGG	MIAKQRGEGAHLLDALWLRTLGDVTSLRSLGFQCRNIGQKIAEHEISEMIEYLEESETKRKSDRNWRPRPVIN*
Ga0073928_1000146936	F095804	AGGA	MRTLVAFLLGLIIGGVAMLFLPDPRRDELNAEIRTQTEALQTQLRQFGDQIKGMKLPQPENTSPTASPSATPK*
Ga0073928_1000146937	F033936	N/A	MELRASTSNNGLVKAENRMNIGVIDEGKRDQIDSRLSYSPSLEAAVNLILGDPAFVGDRATPAFKLLRAARFLKDSAPHVFQIDEMGTVAKNGMDRWLWDLLDQ*
Ga0073928_1000146939	F011789	GAGG	MKTLNAKALSVLKSQSYRTRDKSDNQTLIEIWRMHVSYPGLETVYEVELREPLRSLASKKYTVGLNGLVEFEMFSDPQVAAGDSLQIDAYEPGEMILGGGVL*
Ga0073928_1000146945	F039750	N/A	MSTESKEETVDKKNTGNIEVRMVPEGTFAGTIQKPMLVKDGAPVPENTGDEGGGQN*