Scaffold Ga0073928_10000795

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000795
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67182
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (87.84%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001558	Metagenome / Metatranscriptome	671	Y
F001596	Metagenome / Metatranscriptome	666	Y
F001643	Metagenome / Metatranscriptome	659	Y
F003233	Metagenome / Metatranscriptome	499	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006399	Metagenome / Metatranscriptome	374	Y
F006672	Metagenome / Metatranscriptome	367	Y
F008980	Metagenome / Metatranscriptome	325	Y
F017708	Metagenome	239	Y
F017965	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000079511	F001558	GAGG	MLRVQTQELDGALICRLEGRFTGEGAEQVRTLVTRCDGKLELVVDLTDLMFIDAIGEEVLLFVKRLGAQFVAETSYSRDVCERLQLPFIGKRKSNMQVPGNSDGNGHRPRRR*
Ga0073928_1000079512	F008980	GAGG	MMGAATRNLPEPPARDYIGRVFSQHREELEWLANFLTGDETIAAACLVDACALAESENPGFQEWVLKCACLATIRSAVQIQQRRIVQLSFAYKQRPCIHGGHTALSSDWREILVEESSVVIARLDVLCRSALVICGLEKRSADEAAVLLGIDPAGVEGAYCAAIKSLEVISCEQFQRQNDFAAVYN*
Ga0073928_100007952	F006672	AGGAG	MQALDTLPGESNTSIISSIINWVCPQCGGRMSEFQREGRCRRNWLAEWEWANQTPRSLKSQRRHTGRSMR*
Ga0073928_1000079542	F017708	AGGAG	MAKVIEFYIPKNFRKPLRAEAQPQLGKIIEFCPQTKRSA*
Ga0073928_1000079547	F001596	AGGAG	MSWFHSSTAAVVARNYASSAEIVACFQDQRNVLGRLAFLITGDQATAEQAVVQACEMTLQGNSPFRDWLFEWAKAATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQSDVEERAASLDFILGTDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVCRAAVLGANCHVLTWLHERHVKPVEENHDASPLCRNAGTGAE*
Ga0073928_1000079550	F006399	GGA	MATPALNSRVQSLVTEYGVFWQFWPQFEQTDGERRLVGFEVELIGSHTSDLNHVDPACPTCRHVRSVLLAIVNLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVWVSIYVFLNRANGQSFETDLLNEVKTFLNRWGIHQR*
Ga0073928_1000079551	F017965	AGGA	MSEEIEHRDALYLFACHLEWLTKRNLAAYQELLAALDDHDGDIRRLAESLLHRSSPRLERTATSIESW*
Ga0073928_1000079553	F004823	AGGAG	MYATKAVNGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGHKSELLLNEQDWESLKAIDSPFRRTAQHA*
Ga0073928_100007956	F003233	N/A	MIRRVRYDVQLVRGAPMKLRTFLVAIAILGTVLHPAAAQAKKKTTQVDAPPLEPVLSGTSMQSNAVLSDVIARKPEMPLGPQDILKSYEIAMSLVVEKTSADFSVIVRTQQANQISGEQAEYLLLQSYQIAMMQYQVLSALHDVLKHDIDEAARRQARQSLKTTSSDTVLMVPFPGSVSAYR*
Ga0073928_1000079565	F001643	GGAG	MLGELMNIPTDTLIDMLYMILAGDFAVTANDATEIEQIQRELQRRGGEQRWIFQAVN*