Scaffold Ga0073928_10000608

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000608
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 80564
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (70.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000634	Metagenome / Metatranscriptome	971	Y
F001133	Metagenome / Metatranscriptome	767	Y
F008141	Metagenome / Metatranscriptome	338	Y
F008761	Metagenome / Metatranscriptome	328	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_100006083	F008761	AGG	VARQQNDLEALRDMIGEAHDILRAVSLPEERSQRADELLTAALHLADHLLEVSPAAVIGAKGGSQTAKRGSAYFRKIASMRREKKGGRPTKDRKPN*
Ga0073928_1000060849	F000634	AGGAGG	LPATGQKTAPIAAQRSTIKILYAESDEKALASQTAEMTKVGHHVTTAVGRRAVQDALKGDAFDLVILGPTVSKEDRHHLPYMVKKAHGGTKVLVMHAGTHHHEVDASVDPNISMNRILEKIAGMLQPTPAR*
Ga0073928_1000060852	F008141	GGA	VRLVRLAQIAMLVCIALYVAAGEMLKLKVAGNPADALFHALSFISISVVGATVVVRRTLVLPSEALLLRSEDSLTVKRWQAGHLLLYALCEVLGLFGLILRIDGFTLGNVWGFYLGAFLLLLLYSPRPPHLDFRKRF*
Ga0073928_100006089	F001133	GAG	MWIEKLAGGVLELDTPIGPRYLQPSLMQRAFLLWTFRNFCSLPQAVLRPWERRLIDRLWTDNRFVSLSAPGMMDRPVIGKLERRPPQADVEVLPLRQPVSSSESPEPSREAASA*