Scaffold Ga0073928_10000571

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000571
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84108
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (83.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014543	Metagenome / Metatranscriptome	262	Y
F022713	Metagenome	213	Y
F029263	Metagenome / Metatranscriptome	189	Y
F078996	Metagenome / Metatranscriptome	116	N
F083302	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_100005713	F078996	GAGG	MRFWASVSLGLLATSAVGVAAGGPVQSKSYPRHNETVLARISPGRTSIAMALALWRNPAKNDEQNHSAAWQSCDGDELNVDFSEEGIIQSVWLSKMKAKPSRACANAVVLAPKLRTGLGLRLGDAAARVLQLYGEPDSRSPSTKDQQRLELLYYAFDWAGPDVPQMLEVLCTVEKDGKPGQVIEITLSASSL*
Ga0073928_1000057147	F083302	GGAG	VNVVFYFVAVAAGLALVGLLFWAVRGAAQRKSFDHNSGGLDNVPSPVNNMAQIRQSMDPADFEFAKAKGGRELPARLRRERRRVTLLYLVAIRKDFEHSLRVARFIAVLSPEVSSSQEYERIRLAMIFRWRLQVIKIRLILGLIPQPQLTALWQMAASLAMQMEETMAKLGERAALAAELALQSEKQ*
Ga0073928_1000057186	F014543	AGGA	VERGIVPKTIKAAKRGKAPFNKDKRRRHHHFLVTVYYADSEKFGRVYTDKEKATRFADRQRRSPVVKSVRVSQVS*
Ga0073928_1000057188	F022713	GGCGG	MIMSIQKQPPILEDLRSHSQEELAELRILLSVNAEMRPDPRRPGFFEVPGIDRVYYIFKYPNGSKILLVGVWDRDRVAEMAALSCTAA*
Ga0073928_1000057190	F029263	GGA	MDDSTSNPTDSPALAPAVSELRRGRRAKMARPMRVRPSEPRDDHFEDLPNSANASKHGIYFVSKRSTYYKGMRVFVTFPYTSVHDPMNSEYLAEVVRIDILPNSKFGIAVDLKMTVNMSANSRPGPRA*