Scaffold Ga0073928_10000499

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000499
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 92352
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (79.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001083	Metagenome / Metatranscriptome	783	Y
F001247	Metagenome / Metatranscriptome	737	Y
F008825	Metagenome / Metatranscriptome	327	Y
F012243	Metagenome / Metatranscriptome	282	Y
F016839	Metagenome / Metatranscriptome	244	Y
F054207	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000049933	F012243	GGAGG	VRAYGTVPYFFSYAAFAVVADTVRFAVHNHPSTYYATYWITEAGYDILGILVMYEVLRTLLGTFTRAWWARLIFPSIVLIGIVMSLARTDAVPTRIVGLPHYIVAGEIAVRFMQVFVFAISVTLVPLLGLRWRQYSFGIATGFGLYATVMLLTTIKFSDFGTTFKLLWGWTSLVAYSVAVLIWIWFFSIPQKVTTSELSAPAPGVLKEYKDALRRMR*
Ga0073928_1000049934	F016839	GGAGG	MFSIILTWLIVAWGALSCIYMLRCAWRRFPKRDVDDVIPFLYPVDISLAESLLDPAAEFEFRWKLQPPQFREAQRKRMRLYLELTRRMSHNATVLVAYADAEKNSQDPRRVSLASTLQEKAVEVRLYALLTRFKLRLRLLLRSEILISKPVLPNLRTACDIDGLQTYGALKIAAAAAFVQLPPEELDSLTRNL*
Ga0073928_1000049945	F008825	GGAG	MNCVELQDSLAEVEDASTVEQRAHLMDCPACYALVRELDLIIEAAGRLQAADEPSPQVWNSITTALREEGLIRPQRATQPLVSSFSARWGAARWLVPAAAMLLVALGLYVKQQSAPRPIAEQAAVVAPMVKASDLNDDDLMQEVAVNSPAMKGQYEDNLRQVNDSIREAQGFVDESPNDADARRSLMDAYHQKSMLFEMAMDRALP*
Ga0073928_100004995	F001247	AGG	LKSKTWNVIANTGKQASLESGLEKKEIQKPPQISSKEFIHWLAAEGRVDDDSLRSLFKQ*
Ga0073928_1000049965	F054207	N/A	MLKRNLRVLKWLGTTPAIAVCTACDREFKVPLDILKRVGGAVENLKLQFSEHQCKKDEADSTAD*
Ga0073928_100004998	F001083	GAG	VLESLREDLAYARLNNGRRVLDVADLRQYIYEPMGRIRTTSLAIDGLYRNNNGDGQDISKSNGHNGKAHLDKIWHERDTEAGHLRDEL*