Scaffold Ga0073928_10000375

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000375
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 106172
• Total Scaffold Genes: 122
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 104 (85.25%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000838	Metagenome / Metatranscriptome	866	Y
F001399	Metagenome / Metatranscriptome	705	Y
F001867	Metagenome / Metatranscriptome	624	Y
F002346	Metagenome / Metatranscriptome	568	Y
F003278	Metagenome / Metatranscriptome	496	Y
F006802	Metagenome / Metatranscriptome	364	Y
F013683	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000037514	F013683	AGGA	MELKDHDFIRNPVVQNQIFFLESKCAFCSFSMLTRSIEELVELEKLHRNQCGSSNAAA*
Ga0073928_1000037544	F006802	AGG	VISLFMPLILCLTVVLSVGIGVLAAYGAVIGILEACGQASQMRPSEARPRLVLVPTQNHASGD*
Ga0073928_1000037555	F001399	GGAGG	MKLNDSFTAYDIAEALQGETGKFEVTSPNGERYFVTCQPGHSIVSLEWAGNEPNQQPFLVRKVAQPVAIEGRKKSSA*
Ga0073928_1000037562	F001867	GGAGG	VTGVSPDQLWFQKYLEFHCDDCGSDTGFRSRRRTFSERYLLPIFLLQPVRCAECFRRDYRLVFMPVKDRLPEAAKKAPTNVPRSDRNVA*
Ga0073928_1000037565	F002346	GAGG	MRLLDSFCAAAVIVLAIIDSLLVPKTYTGRIWIFGTCLALLFTAMLNLLRIRNDRGVQGLRLSCITANISMLVFAIALMASIGKSRTLQHPQVPLVGSLLLAETAFSLRKKG*
Ga0073928_1000037581	F000838	GAGG	MSRQFGGERGRLSTSHTQSILAAALVLDWSAQSGVLEVGTAVRIRVMSARALRTTSRIAFFLCGLISLFTGVPFLMLRGAGLPVQSEWVIFVATLALVGLFSVTLAMLPRSWIAKACKKNRDDEQLFLAPLEWLGGFAAISYLLALIAYLAPHRWNLDPQLMLSLCPLYFVKMAFDPSLVTTFFLLAPMNAAVYGSLGLALGYAWLAFRRRTSG*
Ga0073928_100003759	F003278	GGA	MLKISLIDNAGRRRLIVEGKLIAPWAAELRSVCEKARADLRGRELIIEMKHIATISQEGENVILELINEGIKFRCDGVFTKHVVKELTRRAGRNVGEVKR*