Scaffold Ga0073928_10000358

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000358
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 108433
• Total Scaffold Genes: 129
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (60.47%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003842	Metagenome / Metatranscriptome	466	Y
F007949	Metagenome / Metatranscriptome	342	Y
F032739	Metagenome / Metatranscriptome	179	Y
F065479	Metagenome / Metatranscriptome	127	Y
F094183	Metagenome / Metatranscriptome	106	N
F100524	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_10000358102	F065479	AGGA	VADQPDQKQPGATLVFQEALMQAIELWDKTPVSILDQQAVQTHALLMAMGKYITYRKEKRELESCPDGSDFIHRLIMDL*
Ga0073928_1000035825	F032739	GGA	MNAQEAQTLQLGEIVVWTPDGSKGEVIAVEGSGVKVRWEDDQCGYYRFTDLLSQIERLR*
Ga0073928_1000035838	F003842	AGAAG	MVSTKESRPIAPETQKWAFSADGKPLNLDEFLESFRKQGIFYEGKEQWLKGVVKVSWENFFLVCTEELDDISQRAAKVLVQYCLEIVEDVAGRIRGPVDPTKIAEAMKREFDEQYDNPIYQFQWAMRHDGIREAVTNAVSNRWGK*
Ga0073928_1000035851	F094183	GAG	MNYQELAGKLLHLAERLQKHGTKLEGDLVGKSAVKLATDVDQFDATLDGFLASRKSGELLLETLLRSPAAKKHLSLDLLRKALREACSKRLKAEDLVAAKKEFIETVHELDRAEAASKFLKHAFAEAAYVAPGGKEKGELQQEFFALGRLSEEEYVTTIAKRTFGELRRLAGTNGIRFTDKTTKPHLIKVIRRYSRRLATNLLPAA*
Ga0073928_1000035870	F100524	GGA	MHRGLITILCLLAGFSGFAPRTEAAAFRSTEYYCQVTLPDGSYVEPWFAMVPANESGVLTGARRRDFAAYVYVGIVDKKDQPHFVLDDKSIEQLDKSFFGPGLGFLNKTQKINLRGVDGYRLIGRHHFNGRNYAMVVDLYYEHGLVYEVAGLSALYDDALQDSDVLGFMRSFAILPN*
Ga0073928_1000035896	F007949	N/A	MQNLQELCTALNGFGLPRAIVDFEHRSFIAWNPKFLEHTGLSEGEIRASNPDDLLIMAESWFPLSGETGSQKIEYIGCTVKRLFGADPAPGFLVRSNHKIGYLMLDVFDSSSAQFEQGRIVGREEERNRINKAFHDEVSSSIIAALFLIETAKIELEEAGLPQAEAVGKASDILSETTEKIADVLKDGGPTTEPSPSTESDAV*