Scaffold Ga0073928_10000348

Overview

Basic Information

• Taxon OID: 3300006893
• Scaffold ID: Ga0073928_10000348
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110274
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (70.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000132	Metagenome / Metatranscriptome	1972	Y
F000138	Metagenome / Metatranscriptome	1954	Y
F005153	Metagenome / Metatranscriptome	410	Y
F017683	Metagenome / Metatranscriptome	239	Y
F069199	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0073928_1000034834	F000138	AGGAG	MPGQWINSFRISVTTLIAYIPVIATVVTCFFSLILARATLRYVEATDKGLALAREEFEREWTPDLHIKLERVSATEAKVIVTNLAKSSVLLQLLQLRRLSHAMPFERCRLNDPLVGGMTWSQEMGKRILACTDTDFEGPIAASITFYAAGRMFRTDWFRSTIQVRDGRIVSLEPSNMPARRVRVIERKGPERRREFVQDVTGNATPTQAEPRQDEKFFVTGA*
Ga0073928_100003484	F069199	N/A	MPEDGIKKSIQLQEIAPSDLEDVARFISRVSGSKAPLAAAVARLKWILLENPAREPGDPLGWLLRSATGDVVGCMCCAPQKFCLGKSIFRLMMANSFYVDDQYRGSGALIFLKYLQLGDRYPLFVSSANAAVAQLWKKRGGCPLGNSDHEILGILHWPPVVAESVYRKFGSDSVAQVAGALASLAFFAQRRLLPNTATGKLQLLRTPEEAVRVCAEHRSEKITSCRDAAFLKWRYFSGGDPTTRLFAFRQGNGEGERQFMVAVNLLRRGYKQQIRALHVLDIWGETDSKSYLAIAAALRREYRGQVDMLVFRCLDPSLQEALTAHGFKVRPFAAPIAWCVDKSGLLRAKAWYFSPADGDMFL*
Ga0073928_1000034860	F017683	AGGAG	MNFLKQLFGRGCQHRFSWPRIDSGGHYYQICPDCGTAYEYDWTLMRRTERLLVTAVRHG*
Ga0073928_100003489	F005153	GGAG	MQIFHIRYRNAQGALMRILNAASRRGLDLTSVHAEAAEQDHAVTLLLEVNQKQIGQLYREWYGIVDVTDVRSSAAFRDHEEAAWAPHPPTSQTAAQTSARAALA*
Ga0073928_1000034894	F000132	AGGTGG	MLIEKLADGVVQVQTPIGPRYLMPSFLQRIYFVWMFRHFPILPHAVLSGAQQRLLDRLCSEQRFVSMAYADGMEDAPVIGTVEKRPKMGPDSFLPRRPVVSETASGLAAEIRQRS*