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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006893 Open in IMG/M |
| Scaffold ID | Ga0073928_10000216 Open in IMG/M |
| Source Dataset Name | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 140594 |
| Total Scaffold Genes | 122 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 105 (86.07%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Banff | |||||||
| Coordinates | Lat. (o) | 51.1699 | Long. (o) | -116.1578 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001095 | Metagenome / Metatranscriptome | 780 | Y |
| F001292 | Metagenome / Metatranscriptome | 729 | Y |
| F003140 | Metagenome / Metatranscriptome | 505 | Y |
| F052791 | Metagenome | 142 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0073928_1000021634 | F003140 | GGAGG | LKPNPHLFKWIHPTLLAGLSIVFIPSSHAQTLNVSGRYQCATATVQGKSVPCSAAPLILKGDGHFELRGWEGNYLVSGEWVELSDSVVRSRAKIEPGHKIVFRYRGKHGWCEMVYERRVADLGKTSLS* |
| Ga0073928_1000021650 | F001095 | GAGG | MKKRKKKILDVGQVARRKARESGLAPAATRLIPDKRKRPLKHKKASFDETDSI* |
| Ga0073928_100002167 | F052791 | GAG | MDTGEKTSSTISEQIEFAWHNFEDQQAIIRAADLKAGYLVPFLLFFGASTIPLGTKVVPKMRFGDANGAIAAGLYILAYMLLVVGFVWSLLLISRALTPRIARHHQSPREGASLLYYEHVLRHKDNEAYFEAMTKAGPEQLLRNITDQVFELSLICKLKLENLRGFAVSFKWTVVGWCLSTAIGFWIIGRK* |
| Ga0073928_1000021696 | F001292 | GAG | VKSSAEIAAPVQEQGCAEQLARFFPQAAAVRIPVQVTALRGGRTKLREAATLEFAAPDFAIFLSTLPLEFDDRVRLERDRKGRAAEATVIAVQYHEGRKAVAVKFAQGPCDWVTQP* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |